Does anyone know why this is and how I can fix it? I have SSL enabled so maybe this is the cause? It works fine on my localhost, but when I upload it to the web server it stops working properly. Any advice would be appreciated; it's very annoying to have to go through all my folders to get to the page. Thanks.
By "Viewing a page in the editor", I assume you mean when you try to visit a front-end page by clicking a link in the admin-panel.
If that is so, all links from the admin-panel are non-pretty - if the prettyURL feature has been configured and is working as expected, the front-end automatically redirects the non-pretty link to its pretty version.
So, I think, probably prettyURL feature is not working properly on your new server.
Have you made sure to enable it in couch/config.php and then generated a new .htaccess and placed it in your site root?